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Posts | L. Collado-Torres

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Internal links in - lcolladotor.github.io

Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia
Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia | L. Collado-Torres

Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses
Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses | L. Collado-Torres

Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis | L. Collado-Torres

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations] | L. Collado-Torres

Reproducible RNA-seq analysis using recount2
Reproducible RNA-seq analysis using recount2 | L. Collado-Torres

Flexible expressed region analysis for RNA-seq with derfinder
Flexible expressed region analysis for RNA-seq with derfinder | L. Collado-Torres

More Publications
Publications | L. Collado-Torres

Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation
Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation | L. Collado-Torres

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome
Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome | L. Collado-Torres

More Talks
Talks | L. Collado-Torres

From learning to using to teaching to developing R
From learning to using to teaching to developing R | L. Collado-Torres

Reproducible RNA-seq analysis with recount and recount-brain
Reproducible RNA-seq analysis with recount and recount-brain | L. Collado-Torres

Lcolladotor.github.io Spined HTML

Posts | L. Collado-Torres Toggle navigation L. Collado-Torres Home Publications Talks Blog CV Students Teaching Contact Search Posts Sat, Sep 29, 2018 8 min read Science Why I unromantic to join SNI: the Mexican National Researchers registry A few days ago a friend of mine told me that I was on the list of newly admitted SNI members. A few have asked me since why did I request to join it. So here’s my public reply. Woo! Ya soy "Investigador Nacional Nivel I" en el Sistema Nacional de Investigadores de CONACyT en México @Conacyt_MX 🎉💪🏾🇲🇽 I'm a National Researcher lvl I in the Mexican National Researchers Registry ^_^ 🎆🎉https://t. CONTINUE READING Wed, Sep 19, 2018 10 min read Misc Problems with an vendible from the Baltimore Sun tent Dr. Mahoney-Steel’s immigration issues Today, September 19th 2018, Dan Rodricks (Twitter: DanRodricks) published an vendible in the Baltimore Sun. The vendible was shared to me with the title I only thought this happened to Mexicans1 and is currently titled2 as “Rodricks: Hopkins library specialist hit by immigration crackdown without stuff blindsided by visa denial”. I didn’t like the title at all nor did I finger right when reading the article. I shared it with well-nigh 50 other Mexicans in Baltimore3, talked well-nigh it over dinner, discussed a bit with Hopkins colleagues, and now thanks to all of them I have a clearer idea of what my problems with this vendible are. CONTINUE READING Mon, Sep 17, 2018 10 min read Ideas What well-nigh a lawyer-like app as the minimum help for defendants in immigration cases? Today I attended the special panel discussion event at JHSPH tabbed “Separated: Children Separation at the Border A Health and Human Rights Perspective”. It got my mind racing and here’s an idea. It’s likely (definitely) incomplete, but maybe it’ll get others to think on related ideas. Image source Panel summary The panel was well-balanced by: Colleen Kraft, President, American Academy of Pediatrics Eric Schwartz, President, Refugee International George Escobar, Chief of Program and Services, CASA de Maryland Paul Spiegel, Director, Center for Humanitarian Health I missed the first 30 minutes or so but I still got to listen to most of it. CONTINUE READING Thu, Sep 13, 2018 7 min read rstats, UNAM R Gene Regulatory Interaction Formulator For Inquiring Networks This blog post was written by ME Martinez-Sanchez, S Muñoz, M Carrillo, E Azpeitia, D Rosenblueth and originally posted at the CDSB blog.1 In this blog post we will describe the package rGriffin (Martinez-Sanchez, Muñoz, Carrillo, Azpeitia, et al., 2018) that was one of the projects ripened during the TIB2018-BCDW. We hope to protract developing Griffin and rGriffin (Martinez-Sanchez, Muñoz, Carrillo, Azpeitia, et al., 2018). If you have ideas, suggestions or bugs, please contact us via rGriffin GitHub repo. CONTINUE READING Mon, Jul 30, 2018 10 min read Science Harassment, diversity in science and inspiration from my grandmother Today was a big day. I superintendency well-nigh many things including diversity in science (STEM) and towers a polity of R users and developers in Mexico. Both moved forward in two completely separate conferences: one in Mexico: CDSBMexico; and one in Canada: JSM2018. CDSBMexico This was a very important day for me. It was the whence of the Latin American R/BioConductor Developers Workshop 2018 in Cuernavaca, Mexico. I once wrote a blog post well-nigh why I was super excited well-nigh CDSBMexico, but transiently it’s considering this is something we’ve been wanting to see wilt a reality for years and have been working towards it. CONTINUE READING Wed, Jun 20, 2018 12 min read Science SciLifeLab Prize: you still have time to participate! I have recently been getting reminder emails from the Science & SciLifeLab Prize for Young Scientists. The using deadline is July 15th, 2018! Last year I submitted an entry to this competition and I enjoyed the experience, plane if it was a bit rushed. The process of joining the competition is relatively straight forward: Write an essay well-nigh your Ph.D. thesis work. Get a recommendation letter from your Ph. CONTINUE READING Tue, Jun 19, 2018 7 min read Misc Using Slack for Academic DepartmentalLiaisonThis is a joint blog post between Stephanie Hicks and Leonardo Collado-Torres. We want to share with you our wits using Slack and why you should join us. This post is in an interview style. What is Slack? [SH] Slack is a liaison tool for teams. The main idea is you have individual yack rooms (referred to as channels that unchangingly uncork with the # symbol), which are organized by topics. CONTINUE READING Mon, Jun 11, 2018 6 min read Misc Mindfulness I recently participated for the first time in a silent retreat (6 hrs) as part of a Mindfulness-Based Stress Reduction course. I’ve really been enjoying this undertow and the wits of learning new ways (for me) to live largest and enjoy life more. If you haven’t heard of mindfulness surpassing (like me a few months ago), Wikipedia defines it as: Mindfulness is the psychological process of bringing one's sustentation to experiences occurring in the present moment, which can be ripened through the practice of meditation and other training. CONTINUE READING Fri, Apr 27, 2018 8 min read rstats Getting ready to shepherd rOpenSci unconf18 and probably working on tidyverse-like functions for the first time It’s Friday 7pm and it’s been a long week with ups and downs1. But I’m enthused as I write this blog post. In less than a month from now I’ll be peekaboo rOpenSci unconf18 and it’ll be my first time at this type of event. Yay!Towerson my streak of good news, I'm delighted to have been selected to shepherd @rOpenSci #Unconf18 https://t.co/Xe6lojB7TS ^_^ Also, thanks to the https://t.co/o5OwUWEaBD and @LieberInstitute for their support! CONTINUE READING Thu, Apr 19, 2018 6 min read rstats, UNAM Latin American R/BioConductor Developers Workshop 2018 Today I’m excited to invite you to shepherd the Latin American R/BioConductor Developers Workshop 2018! It’ll be held in Cuernavaca, Mexico from July 30th to August 3rd, 2018. You can find the official utterance in the Bioconductor support website. Let me share with you why I’m excited well-nigh this workshop. At BioC2017, Alejandro Reyes and I talked for a while well-nigh the low representation of Latin Americans through out the years that either of us have attended the BioC meetings1. CONTINUE READING > © 2011-2018 Leonardo Collado Torres under (CC) BY-NC-SA 4.0. All thoughts and opinions here are my own. · Powered by the Academic theme for Hugo. × Cite Copy Download

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