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Publications | L. Collado-Torres
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Internal links in - lcolladotor.github.io
Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia
Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia | L. Collado-Torres
Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia | L. Collado-Torres
Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses
Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses | L. Collado-Torres
Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses | L. Collado-Torres
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis | L. Collado-Torres
Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis | L. Collado-Torres
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations] | L. Collado-Torres
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations] | L. Collado-Torres
Reproducible RNA-seq analysis using recount2
Reproducible RNA-seq analysis using recount2 | L. Collado-Torres
Reproducible RNA-seq analysis using recount2 | L. Collado-Torres
Flexible expressed region analysis for RNA-seq with derfinder
Flexible expressed region analysis for RNA-seq with derfinder | L. Collado-Torres
Flexible expressed region analysis for RNA-seq with derfinder | L. Collado-Torres
More Publications
Publications | L. Collado-Torres
Publications | L. Collado-Torres
Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation
Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation | L. Collado-Torres
Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation | L. Collado-Torres
Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome
Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome | L. Collado-Torres
Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome | L. Collado-Torres
More Talks
Talks | L. Collado-Torres
Talks | L. Collado-Torres
From learning to using to teaching to developing R
From learning to using to teaching to developing R | L. Collado-Torres
From learning to using to teaching to developing R | L. Collado-Torres
Reproducible RNA-seq analysis with recount and recount-brain
Reproducible RNA-seq analysis with recount and recount-brain | L. Collado-Torres
Reproducible RNA-seq analysis with recount and recount-brain | L. Collado-Torres
More Posts
Posts | L. Collado-Torres
Posts | L. Collado-Torres
rstats
Rstats | L. Collado-Torres
Rstats | L. Collado-Torres
Science
Why I applied to join SNI: the Mexican National Researchers registry
Science | L. Collado-Torres
Science | L. Collado-Torres
Misc
Problems with an article from the Baltimore Sun covering Dr. Mahoney-Steel’s immigration issues
Misc | L. Collado-Torres
Misc | L. Collado-Torres
CONTINUE READING
Problems with an article from the Baltimore Sun covering Dr. Mahoney-Steel’s immigration issues | L. Collado-Torres
Problems with an article from the Baltimore Sun covering Dr. Mahoney-Steel’s immigration issues | L. Collado-Torres
Ideas
What about a lawyer-like app as the minimum help for defendants in immigration cases?
Ideas | L. Collado-Torres
Ideas | L. Collado-Torres
CONTINUE READING
What about a lawyer-like app as the minimum help for defendants in immigration cases? | L. Collado-Torres
What about a lawyer-like app as the minimum help for defendants in immigration cases? | L. Collado-Torres
here
MPH TA sessions
MPH TA sessions
Analysis of High-Throughput Sequencing data with Bioconductor
L. Collado Torres: PDCB-HTS
L. Collado Torres: PDCB-HTS
Introduction to R and Biostatistics
L. Collado Torres: PDCB-Biostats
L. Collado Torres: PDCB-Biostats
Introduction to R for bench biologists
L. Collado Torres: R Intro for Bench Biologists
L. Collado Torres: R Intro for Bench Biologists
Métodos Estadísticos y Analíticos de Datos Genómicos
L. Collado Torres: MEyAdDG
L. Collado Torres: MEyAdDG
backup
R/Bioconductor. Curso Intensivo Oct-Nov 2008
R/Bioconductor. Curso Intensivo Oct-Nov 2008
backup
Principios de EstadÃstica. Feb-Jun 2009
Principios de EstadÃstica. Feb-Jun 2009
backup
Seminario III: R/Bioconductor. Ago-Dic 2009
Seminario III: R/Bioconductor. Ago-Dic 2009
this post
How to ask for help for Bioconductor packages | L. Collado-Torres
How to ask for help for Bioconductor packages | L. Collado-Torres
Lcolladotor.github.io Spined HTML
Publications | L. Collado-Torres Toggle navigation L. Collado-Torres Home Publications Talks Blog CV Students Teaching Contact Search Publications Filter by type: All Peer-reviewed Pre-print Book installment Poster All 2018 2017 2016 2015 2014 2013 2011 2010 Integrated DNA methylation and gene expression profiling wideness multiple smart-ass regions implicate novel genes in Alzheimer's disease Stephen A Semick, Rahul A Bharadwaj, Leonardo Collado-Torres, Ran Tao, Joo Heon Shin, Amy Deep-Soboslay, James Weiss, Daniel R Weinberger, Thomas M Hyde, Joel E Kleinman, Andrew E Jaffe †, Venkata S Mattay † PDF Code Pre-print Divergent neuronal DNA methylation patterns wideness human cortical development: Critical periods and a unique role of CpH methylation Amanda J. Price *, Leonardo Collado-Torres *, Nikolay A. Ivanov, Wei Xia, Emily E. Burke, Joo Heon Shin, Ran Tao, Liang Ma, Yankai Jia, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger, Andrew E Jaffe PDF Code Pre-print Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex wideness minutiae and in schizophrenia Leonardo Collado-Torres, Emily E Burke, Amy Peterson, Joo Heon Shin, Richard E Straub, Anandita Rajpurohit, Stephen A Semick, William S Ulrich, BrainSeq Consortium, Cristian Valencia, Ran Tao, Amy Deep-Soboslay, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger †, Andrew E Jaffe † PDF Code Pre-print Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome Semick SA, Collado-Torres L, Markunas CA, Shin JH, Deep-Soboslay A, Tao R, Huestis MA, Bierut LJ, Maher BS, Johnson EO, Hyde TM, Weinberger DR, Hancock DB, Kleinman JE †, Jaffe AE † PDF Code Pre-print Read for self-ruling Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses Helena Kuri-Magaña, Leonardo Collado-Torres, Andrew E Jaffe, Humberto Valdovinos-Torres, Marbella Ovilla-Muñoz, Juan M Téllez-Sosa, Laura C Bonifaz-Alfonzo, Jesús Martínez-Barnetche PDF Pre-print Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs Emily E Burke, Joshua G Chenoweth, Joo Heon Shin, Leonardo Collado-Torres, Suel Kee Kim, Nicola Micali, Yanhong Wang, Richard E Straub, Daniel J Hoeppner, Huei-Ying Chen, Alana Lescure, Kamel Shibbani, Gregory R Hamersky, BaDoi N Phan, William S Ulrich, Cristian Valencia, Amritha Jaishankar, Amanda J Price, Anandita Rajpurohit, Stephen A Semick, Roland Bürli, James C Barrow, Daniel J Hiler, Stephanie Cerceo Page, Keri Martinowich, Thomas M Hyde, Joel E Kleinman, Karen F Berman, José A Apud, Alan J Cross, Nick J Brandon, Daniel R Weinberger, Brady J Maher, Ronald DG McKay †, Andrew E Jaffe † PDF Pre-print Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis Jaffe AE, Straub R, Shin JH, Tao R, Gao Y, Collado-Torres L, Kam-Thong T, Xi HS, Quan J, Chen Q, Colantuoni C, Ulrich WS, Maher BJ, Deep-Soboslay A, The BrainSeq Consortium, Cross AJ, Brandon NJ, Leek JT, Hyde TM, Kleinman JE, Weinberger DR PDF Project Pre-print Improving the value of public RNA-seq expression data by phenotype prediction Shannon SE, Collado-Torres L, Jaffe AE, Leek JT PDF Code Project Pre-print RNA-seq transcript quantification from reduced-representation data in recount2 Fu J, Kammers K, Nellore A, Collado-Torres L, Leek JT, Taub MA PDF Pre-print recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 tried with reservations] L Collado-Torres †, A Nellore, AE Jaffe PDF Code Bioconductor Bioc2017 workshop Altered expression of histamine signaling genes in autism spectrum disorder C Wright, JH Shin, A Rajpurohit, A Deep-Soboslay, L Collado-Torres, NJ Brandon, TM Hyde, JE Kleinman, AE Jaffe, AJ Cross, DR Weinberger PDF Code Reproducible RNA-seq wringer using recount2 L Collado-Torres *, A Nellore *, K Kammers, SE Ellis, MA Taub, KD Hansen, AE Jaffe, B Langmead, JT Leek PDF Code Project Bioconductor Pre-print Human splicing diversity and the extent of unannotated splice junctions wideness human RNA-seq samples on the Sequence Read Archive A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, S Wang, RA Phillips, N Karbhari, KD Hansen, B Langmead, JT Leek PDF Code Dataset Project Pre-print Flexible expressed region wringer for RNA-seq with derfinder L Collado-Torres, A Nellore, AC Frazee, C Wilks, MI Love, B Langmead, RA Irizarry, JT Leek, AE Jaffe PDF Code Project Bioconductor Pre-print Rail-RNA: Scalable wringer of RNA-seq splicing and coverage A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, J Pritt, J Morton, JT Leek, B Langmead PDF Project Pre-print regionReport: Interactive reports for region-level and feature-level genomic analyses L Collado-Torres, AE Jaffe, JT Leek PDF Code Project Bioconductor Pre-print Annotation-agnostic RNA-seq differential expression wringer software Developmental regulation of human cortex transcription and its clinical relevance at single wiring resolution Jaffe AE, Shin J, Collado-Torres L, Leek JT, Tao R, Li C, Gao Y, Jia Y, Maher BJ, Hyde TM, Kleinman JE, Weinberger DR PDF Measurement, Summary, and Methodological Variation in RNA-sequencing in StatisticalWringerof Next Generation Sequencing Data AC Frazee, L Collado-Torres, AE Jaffe, B Langmead, JT Leek PDF Fast Annotation-Agnostic Differential ExpressionWringerInterspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus Shank EA, Klepac-Ceraj V, Collado-Torres L, Powers GE, Losick R, Kolter R PDF RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) Gama-Castro S, Salgado H, Peralta-Gil M, Santos-Zavaleta A, Muñiz-Rascado L, Solano-Lira H, Jimenez-Jacinto V, Weiss V, García-Sotelo JS, López-Fuentes A, Porrón-Sotelo L, Alquicira-Hernández S, Medina-Rivera A, Martínez-Flores I, Alquicira-Hernández K, Martínez-Adame R, Bonavides-Martínez C, Miranda-Ríos J, Huerta AM, Mendoza-Vargas A, Collado-Torres L, Taboada B, Vega-Alvarado L, Olvera M, Olvera L, Grande R, Morett E, Collado-Vides J PDF GlobalWringerof Transcription Start Sites and Transcription Units in Bacterial Genomes PDF © 2011-2018 Leonardo Collado Torres under (CC) BY-NC-SA 4.0. 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